BAM Report
A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Anlisis de alineamientos con la secuencia de referencia.
Report
generated on 2025-01-18, 17:58 UTC
based on data in:
/corral4/main/jobs/064/359/64359097/working/multiqc_WDir
General Statistics
| Sample Name | Reads mapped |
|---|---|
| flagstatistics | 2.0M |
Samtools
Toolkit for interacting with BAM/CRAM files.URL: http://www.htslib.orgDOI: 10.1093/bioinformatics/btp352
Flagstat
This module parses the output from samtools flagstat
XY counts
Mapped reads per contig
The samtools idxstats tool counts the number of mapped reads per chromosome / contig. Chromosomes with < 0.1% of the total aligned reads are omitted from this plot.